IL_11HG_166

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

11HG|1|28|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_166 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1802

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

11HG|1|28|G|2001
11HG|1|28|A|2002
11HG|1|28|G|2003
11HG|1|28|U|2004
11HG|1|28|G|2005
*
11HG|1|28|C|2014
11HG|1|28|U|2015
11HG|1|28|C|2016

Current chains

Chain 28

28s rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11