IL_11HG_170

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

11HG|1|28|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_170 not in the Motif Atlas

Homologous match to IL_8GLP_086

Geometric discrepancy: 0.0769

The information below is about IL_8GLP_086

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

11HG|1|28|C|2302
11HG|1|28|C|2303
11HG|1|28|U|2304
11HG|1|28|U|2305
11HG|1|28|G|2306
11HG|1|28|A|2307
11HG|1|28|A|2308
11HG|1|28|G|2309
*
11HG|1|28|U|2329
11HG|1|28|G|2330
11HG|1|28|G|2331
11HG|1|28|A|2332
11HG|1|28|G|2333

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 32

Large ribosomal subunit protein eL32

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4