IL_11HG_186

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_186 not in the Motif Atlas

Geometric match to IL_8GLP_304

Geometric discrepancy: 0.1058

The information below is about IL_8GLP_304

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.5

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

37

Unit IDs

11HG|1|28|G|2847
11HG|1|28|G|2848
11HG|1|28|A|2849
11HG|1|28|A|2850
*
11HG|1|28|U|3840
11HG|1|28|C|3841

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 23

Ribosomal protein L23

Chain L3

60S ribosomal protein L3