IL_11HG_193
3D structure
- PDB id
- 11HG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 11HG|1|28|A|3663, 11HG|1|28|U|3679, 11HG|1|28|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11HG_193 not in the Motif Atlas
- Homologous match to IL_8GLP_114
- Geometric discrepancy: 0.1216
- The information below is about IL_8GLP_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.4
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
11HG|1|28|C|3660
11HG|1|28|G|3661
11HG|1|28|A|3662
11HG|1|28|A|3663
11HG|1|28|G|3664
11HG|1|28|G|3665
*
11HG|1|28|U|3677
11HG|1|28|G|3678
11HG|1|28|U|3679
11HG|1|28|U|3680
11HG|1|28|G|3681
11HG|1|28|A|3682
11HG|1|28|C|3683
11HG|1|28|G|3684
Current chains
- Chain 28
- 28s rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain L8
- 60S ribosomal protein L8
- Chain ff
- 60S ribosomal protein L37a
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