IL_11HG_195

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

11HG|1|28|A|3746, 11HG|1|28|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_195 not in the Motif Atlas

Homologous match to IL_8GLP_117

Geometric discrepancy: 0.0691

The information below is about IL_8GLP_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

11HG|1|28|U|3704
11HG|1|28|G|3705
*
11HG|1|28|U|3745
11HG|1|28|A|3746
11HG|1|28|A|3747
11HG|1|28|A|3748

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain L8

60S ribosomal protein L8