IL_11HG_199

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

11HG|1|28|A|3785, 11HG|1|28|C|3791, 11HG|1|28|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_199 not in the Motif Atlas

Homologous match to IL_8GLP_307

Geometric discrepancy: 0.192

The information below is about IL_8GLP_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.3

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

11HG|1|28|C|3781
11HG|1|28|C|3782
11HG|1|28|A|3783
11HG|1|28|A|3784
11HG|1|28|A|3785
11HG|1|28|U|3786
11HG|1|28|G|3787
11HG|1|28|C|3788
11HG|1|28|C|3789
11HG|1|28|U|3790
11HG|1|28|C|3791
11HG|1|28|G|3792
*
11HG|1|28|C|3808
11HG|1|28|G|3809
11HG|1|28|C|3810
11HG|1|28|G|3811

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41