IL_11HG_215

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_215 not in the Motif Atlas

Homologous match to IL_9PN5_101

Geometric discrepancy: 0.1158

The information below is about IL_9PN5_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11HG|1|28|C|4412
11HG|1|28|C|4413
11HG|1|28|A|4414
11HG|1|28|A|4415
11HG|1|28|G|4416
*
11HG|1|28|C|4426
11HG|1|28|G|4427
11HG|1|28|A|4428
11HG|1|28|C|4429
11HG|1|28|G|4430

Current chains

Chain 28

28s rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 40

Large ribosomal subunit protein eL40

Chain CE

Coiled-coil domain-containing protein 124