IL_11HG_253

3D structure

PDB id

11HG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,CCDC124,and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11HG_253 not in the Motif Atlas

Geometric match to IL_8K85_007

Geometric discrepancy: 0.1187

The information below is about IL_8K85_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11HG|1|ES|G|2946
11HG|1|ES|G|2947
11HG|1|ES|C|2948
*
11HG|1|ES|G|3246
11HG|1|ES|A|3247
11HG|1|ES|C|3248

Current chains

Chain ES

ES27L

Nearby chains

Chain F

Proliferation-associated protein 2G4