IL_11KH_018
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 11KH|1|18|U|368, 11KH|1|18|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_018 not in the Motif Atlas
- Geometric match to IL_8GLP_211
- Geometric discrepancy: 0.1872
- The information below is about IL_8GLP_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01372.3
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
11KH|1|18|U|366
11KH|1|18|U|367
11KH|1|18|U|368
11KH|1|18|C|369
11KH|1|18|G|370
11KH|1|18|A|371
*
11KH|1|18|U|393
11KH|1|18|G|394
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain DD
- Small ribosomal subunit protein uS17
- Chain S8
- 40S ribosomal protein S8
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