IL_11KH_031

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

11KH|1|18|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_031 not in the Motif Atlas

Homologous match to IL_9H3G_189

Geometric discrepancy: 0.1354

The information below is about IL_9H3G_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

11KH|1|18|G|665
11KH|1|18|U|666
11KH|1|18|U|667
11KH|1|18|A|668
11KH|1|18|A|669
11KH|1|18|A|670
11KH|1|18|A|671
*
11KH|1|18|U|1161
11KH|1|18|C|1162

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S2

40S ribosomal protein S2

Chain UU

eS26