IL_11KH_065

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_065 not in the Motif Atlas

Homologous match to IL_9H3G_223

Geometric discrepancy: 0.1204

The information below is about IL_9H3G_223

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

11KH|1|18|U|1347
11KH|1|18|G|1348
11KH|1|18|G|1349
*
11KH|1|18|C|1380
11KH|1|18|G|1381
11KH|1|18|A|1382

Current chains

Chain 18

18S rRNA

Nearby chains

Chain BB

Small ribosomal subunit protein uS2

Chain RS

40S ribosomal protein S17

Chain S2

40S ribosomal protein S2

Chain S3

Small ribosomal subunit protein uS3