IL_11KH_068

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

11KH|1|18|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_068 not in the Motif Atlas

Homologous match to IL_9PN5_214

Geometric discrepancy: 0.5588

The information below is about IL_9PN5_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

11KH|1|18|C|1412
11KH|1|18|G|1413
*
11KH|1|18|C|1427
11KH|1|18|G|1428
11KH|1|18|G|1429

Current chains

Chain 18

18S rRNA

Nearby chains

Chain II

Small ribosomal subunit protein uS9

Chain MM

Small ribosomal subunit protein eS19