IL_11KH_069

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_069 not in the Motif Atlas

Geometric match to IL_8GLP_255

Geometric discrepancy: 0.1298

The information below is about IL_8GLP_255

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11KH|1|18|A|1537
11KH|1|18|C|1538
11KH|1|18|U|1539
*
11KH|1|18|A|1594
11KH|1|18|U|1595
11KH|1|18|U|1596

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LL

40S ribosomal protein S18

Chain MM

Small ribosomal subunit protein eS19

Chain S5

Small ribosomal subunit protein uS7

Chain TT

40S ribosomal protein S25