IL_11KH_084

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_084 not in the Motif Atlas

Homologous match to IL_9H3G_243

Geometric discrepancy: 0.1237

The information below is about IL_9H3G_243

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

11KH|1|18|C|1742
11KH|1|18|G|1743
11KH|1|18|G|1744
11KH|1|18|A|1745
11KH|1|18|U|1746
*
11KH|1|18|A|1788
11KH|1|18|G|1789
11KH|1|18|A|1790
11KH|1|18|A|1791
11KH|1|18|G|1792

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8

Chain W

eL24