IL_11KH_086

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_086 not in the Motif Atlas

Geometric match to IL_9H3G_077

Geometric discrepancy: 0.1943

The information below is about IL_9H3G_077

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

11KH|1|18|C|1751
11KH|1|18|C|1752
*
11KH|1|18|G|1780
11KH|1|18|A|1781
11KH|1|18|G|1782

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S6

40S ribosomal protein S6