IL_11KH_102
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 11KH|1|28|G|409, 11KH|1|28|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_102 not in the Motif Atlas
- Geometric match to IL_8GLP_019
- Geometric discrepancy: 0.0838
- The information below is about IL_8GLP_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.3
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
11KH|1|28|G|387
11KH|1|28|A|388
11KH|1|28|A|389
11KH|1|28|C|390
*
11KH|1|28|G|401
11KH|1|28|A|402
11KH|1|28|G|403
11KH|1|28|U|404
11KH|1|28|U|405
11KH|1|28|C|406
11KH|1|28|A|407
11KH|1|28|A|408
11KH|1|28|G|409
11KH|1|28|A|410
11KH|1|28|G|411
11KH|1|28|G|412
11KH|1|28|G|413
11KH|1|28|C|414
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 26
- 60S ribosomal protein L26
- Chain 39
- 60S ribosomal protein L39
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Proliferation-associated protein 2G4
Coloring options: