IL_11KH_106

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_106 not in the Motif Atlas

Homologous match to IL_8GLP_025

Geometric discrepancy: 0.2059

The information below is about IL_8GLP_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11KH|1|28|G|462
11KH|1|28|A|463
11KH|1|28|G|464
*
11KH|1|28|C|691
11KH|1|28|A|692
11KH|1|28|C|693

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

large ribosomal subunit protein eL6

Chain gg

60S ribosomal protein L28