IL_11KH_107

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

11KH|1|28|U|467, 11KH|1|28|C|685, 11KH|1|28|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|A|466
11KH|1|28|U|467
11KH|1|28|U|468
11KH|1|28|C|469
11KH|1|28|A|470
11KH|1|28|A|471
11KH|1|28|C|472
*
11KH|1|28|G|682
11KH|1|28|C|683
11KH|1|28|G|684
11KH|1|28|C|685
11KH|1|28|A|686
11KH|1|28|U|687
11KH|1|28|U|688
11KH|1|28|U|689

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L6

large ribosomal subunit protein eL6

Chain gg

60S ribosomal protein L28