IL_11KH_116

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

11KH|1|28|G|729, 11KH|1|28|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_116 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0999

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

11KH|1|28|C|727
11KH|1|28|U|728
11KH|1|28|G|729
11KH|1|28|G|730
11KH|1|28|G|731
*
11KH|1|28|C|938
11KH|1|28|G|939

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20

Chain L7

60S ribosomal protein L7