IL_11KH_117

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

11KH|1|28|A|932, 11KH|1|28|A|935, 11KH|1|28|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|A|732
11KH|1|28|A|733
11KH|1|28|G|734
11KH|1|28|G|735
*
11KH|1|28|C|928
11KH|1|28|A|929
11KH|1|28|G|930
11KH|1|28|C|931
11KH|1|28|A|932
11KH|1|28|G|933
11KH|1|28|C|934
11KH|1|28|A|935
11KH|1|28|G|935|||A
11KH|1|28|C|936
11KH|1|28|U|937

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20

Chain L4

60S ribosomal protein L4