IL_11KH_130
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_130 not in the Motif Atlas
- Homologous match to IL_8GLP_052
- Geometric discrepancy: 0.2765
- The information below is about IL_8GLP_052
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
11KH|1|28|C|1431
11KH|1|28|G|1432
11KH|1|28|A|1433
11KH|1|28|G|1434
*
11KH|1|28|C|1450
11KH|1|28|G|1451
11KH|1|28|A|1452
11KH|1|28|G|1453
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4
- Chain Q
- Large ribosomal subunit protein eL18
Coloring options: