IL_11KH_134
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 11KH|1|28|A|1650, 11KH|1|28|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_134 not in the Motif Atlas
- Homologous match to IL_8GLP_290
- Geometric discrepancy: 0.0706
- The information below is about IL_8GLP_290
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.3
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
11KH|1|28|G|1522
11KH|1|28|A|1523
11KH|1|28|A|1524
11KH|1|28|A|1525
11KH|1|28|G|1526
*
11KH|1|28|C|1648
11KH|1|28|U|1649
11KH|1|28|A|1650
11KH|1|28|G|1651
11KH|1|28|U|1652
11KH|1|28|A|1653
11KH|1|28|G|1654
11KH|1|28|C|1655
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 37
- 60S ribosomal protein L37
- Chain L4
- 60S ribosomal protein L4
- Chain dd
- 60S ribosomal protein L27a
Coloring options: