IL_11KH_136

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_136 not in the Motif Atlas

Homologous match to IL_8GLP_059

Geometric discrepancy: 0.1179

The information below is about IL_8GLP_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

11KH|1|28|C|1551
11KH|1|28|G|1552
11KH|1|28|A|1553
11KH|1|28|A|1554
11KH|1|28|G|1555
*
11KH|1|28|U|1572
11KH|1|28|G|1573
11KH|1|28|G|1574
11KH|1|28|A|1575
11KH|1|28|G|1576

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain L8

60S ribosomal protein L8

Chain ff

60S ribosomal protein L37a