IL_11KH_138

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

11KH|1|28|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_138 not in the Motif Atlas

Homologous match to IL_8GLP_061

Geometric discrepancy: 0.0607

The information below is about IL_8GLP_061

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

11KH|1|28|C|1590
11KH|1|28|U|1591
11KH|1|28|G|1592
*
11KH|1|28|C|1603
11KH|1|28|G|1604

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 37

60S ribosomal protein L37

Chain L3

60S ribosomal protein L3