IL_11KH_148

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

11KH|1|28|C|1755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_148 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.2602

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

11KH|1|28|G|1753
11KH|1|28|U|1754
11KH|1|28|C|1755
11KH|1|28|U|1756
*
11KH|1|28|A|1776
11KH|1|28|C|1777

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L5

60S ribosomal protein L5