IL_11KH_153

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

11KH|1|28|U|2070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_153 not in the Motif Atlas

Homologous match to IL_8GLP_075

Geometric discrepancy: 0.122

The information below is about IL_8GLP_075

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

11KH|1|28|U|1905
11KH|1|28|U|1906
11KH|1|28|A|1907
11KH|1|28|A|1908
11KH|1|28|G|1909
*
11KH|1|28|C|2067
11KH|1|28|C|2068
11KH|1|28|A|2069
11KH|1|28|U|2070
11KH|1|28|A|2071

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain 5

5S ribosomal RNA; 5S rRNA

Chain L7

60S ribosomal protein L7

Chain Q

Large ribosomal subunit protein eL18

Chain ee

Large ribosomal subunit protein eL33