IL_11KH_170

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

11KH|1|28|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_170 not in the Motif Atlas

Homologous match to IL_9AXU_061

Geometric discrepancy: 0.561

The information below is about IL_9AXU_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

11KH|1|28|G|2542
11KH|1|28|A|2543
11KH|1|28|G|2544
11KH|1|28|U|2545
11KH|1|28|G|2546
11KH|1|28|G|2547
*
11KH|1|28|C|2772
11KH|1|28|G|2773
11KH|1|28|C|2774

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 38

Large ribosomal subunit protein eL38

Chain 58

5.8S ribosomal RNA; 5.8S rRNA