IL_11KH_173

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAG*CCCUUGAAAAU

Length

16 nucleotides

Bulged bases

11KH|1|28|C|2739, 11KH|1|28|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|A|2598
11KH|1|28|G|2599
11KH|1|28|A|2600
11KH|1|28|A|2601
11KH|1|28|G|2602
*
11KH|1|28|C|2737
11KH|1|28|C|2738
11KH|1|28|C|2739
11KH|1|28|U|2740
11KH|1|28|U|2741
11KH|1|28|G|2742
11KH|1|28|A|2743
11KH|1|28|A|2744
11KH|1|28|A|2745
11KH|1|28|A|2746
11KH|1|28|U|2747

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 34

60S ribosomal protein L34

Chain L8

60S ribosomal protein L8

Chain ff

60S ribosomal protein L37a