IL_11KH_178

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

11KH|1|28|G|2711

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_178 not in the Motif Atlas

Homologous match to IL_8GLP_102

Geometric discrepancy: 0.2971

The information below is about IL_8GLP_102

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

11KH|1|28|C|2704
11KH|1|28|G|2705
*
11KH|1|28|C|2710
11KH|1|28|G|2711
11KH|1|28|G|2712

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 22

Large ribosomal subunit protein eL22

Chain F

Proliferation-associated protein 2G4