IL_11KH_180

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_180 not in the Motif Atlas

Homologous match to IL_9H3G_084

Geometric discrepancy: 0.1312

The information below is about IL_9H3G_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10432.3

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

11KH|1|28|A|2844
11KH|1|28|A|2845
11KH|1|28|G|2846
*
11KH|1|28|C|3842
11KH|1|28|C|3843
11KH|1|28|U|3844

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 23

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3

Chain W

eL24