IL_11KH_188
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 11KH|1|28|A|3663, 11KH|1|28|U|3679, 11KH|1|28|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_188 not in the Motif Atlas
- Homologous match to IL_8GLP_114
- Geometric discrepancy: 0.1421
- The information below is about IL_8GLP_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14684.3
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
11KH|1|28|C|3660
11KH|1|28|G|3661
11KH|1|28|A|3662
11KH|1|28|A|3663
11KH|1|28|G|3664
11KH|1|28|G|3665
*
11KH|1|28|U|3677
11KH|1|28|G|3678
11KH|1|28|U|3679
11KH|1|28|U|3680
11KH|1|28|G|3681
11KH|1|28|A|3682
11KH|1|28|C|3683
11KH|1|28|G|3684
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain L8
- 60S ribosomal protein L8
- Chain ff
- 60S ribosomal protein L37a
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