IL_11KH_195
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 11KH|1|28|A|3785, 11KH|1|28|C|3791, 11KH|1|28|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_195 not in the Motif Atlas
- Homologous match to IL_8GLP_307
- Geometric discrepancy: 0.1053
- The information below is about IL_8GLP_307
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
11KH|1|28|C|3781
11KH|1|28|C|3782
11KH|1|28|A|3783
11KH|1|28|A|3784
11KH|1|28|A|3785
11KH|1|28|U|3786
11KH|1|28|G|3787
11KH|1|28|C|3788
11KH|1|28|C|3789
11KH|1|28|U|3790
11KH|1|28|C|3791
11KH|1|28|G|3792
*
11KH|1|28|C|3808
11KH|1|28|G|3809
11KH|1|28|C|3810
11KH|1|28|G|3811
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 41
- eL41
Coloring options: