IL_11KH_229

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGGAUAGC*GUGCGGAGAG

Length

21 nucleotides

Bulged bases

11KH|1|28|C|4757, 11KH|1|28|U|4758, 11KH|1|28|A|4764, 11KH|1|28|G|4870, 11KH|1|28|C|4871, 11KH|1|28|G|4873, 11KH|1|28|A|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|C|4756
11KH|1|28|C|4757
11KH|1|28|U|4758
11KH|1|28|C|4759
11KH|1|28|G|4760
11KH|1|28|G|4761
11KH|1|28|A|4762
11KH|1|28|U|4763
11KH|1|28|A|4764
11KH|1|28|G|4765
11KH|1|28|C|4766
*
11KH|1|28|G|4868
11KH|1|28|U|4869
11KH|1|28|G|4870
11KH|1|28|C|4871
11KH|1|28|G|4872
11KH|1|28|G|4873
11KH|1|28|A|4874
11KH|1|28|G|4875
11KH|1|28|A|4876
11KH|1|28|G|4877

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain 20

Large ribosomal subunit protein eL20

Chain L6

large ribosomal subunit protein eL6

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13