IL_11KH_239

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

11KH|1|28|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_239 not in the Motif Atlas

Homologous match to IL_8GLP_176

Geometric discrepancy: 0.0698

The information below is about IL_8GLP_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|U|5003
11KH|1|28|C|5004
11KH|1|28|G|5005
11KH|1|28|U|5006
11KH|1|28|A|5007
11KH|1|28|C|5008
11KH|1|28|G|5009
*
11KH|1|28|U|5039
11KH|1|28|U|5040
11KH|1|28|G|5041
11KH|1|28|A|5042
11KH|1|28|A|5043
11KH|1|28|A|5044

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3

Chain W

eL24