IL_12DP_046

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

12DP|1|1A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_046 not in the Motif Atlas

Homologous match to IL_8B0X_110

Geometric discrepancy: 0.1042

The information below is about IL_8B0X_110

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

12DP|1|1A|G|1319
12DP|1|1A|C|1320
12DP|1|1A|A|1321
12DP|1|1A|A|1322
12DP|1|1A|U|1323
*
12DP|1|1A|A|1331
12DP|1|1A|G|1332
12DP|1|1A|C|1333

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1W

50S ribosomal protein L22

Chain 1X

50S ribosomal protein L23