IL_12DP_059
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAGAAC*GAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_059 not in the Motif Atlas
- Homologous match to IL_8B0X_123
- Geometric discrepancy: 0.0616
- The information below is about IL_8B0X_123
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12566.7
- Basepair signature
- cWW-L-tHS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
12DP|1|1A|G|1651
12DP|1|1A|A|1652
12DP|1|1A|G|1653
12DP|1|1A|A|1654
12DP|1|1A|A|1655
12DP|1|1A|C|1656
*
12DP|1|1A|G|2004
12DP|1|1A|A|2005
12DP|1|1A|C|2006
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1R
- 50S ribosomal protein L17
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