IL_12DP_099
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CCUCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 12DP|1|1A|U|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_099 not in the Motif Atlas
- Homologous match to IL_8B0X_162
- Geometric discrepancy: 0.097
- The information below is about IL_8B0X_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.15
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 24
Unit IDs
12DP|1|1A|C|2680
12DP|1|1A|C|2681
12DP|1|1A|U|2682
12DP|1|1A|C|2683
12DP|1|1A|U|2684
*
12DP|1|1A|A|2725
12DP|1|1A|U|2726
12DP|1|1A|G|2727
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1O
- 50S ribosomal protein L14
- Chain 1R
- 50S ribosomal protein L17
- Chain 1T
- 50S ribosomal protein L19
Coloring options: