IL_12DP_108

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_108 not in the Motif Atlas

Homologous match to IL_4V9F_103

Geometric discrepancy: 0.0952

The information below is about IL_4V9F_103

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.5

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

26

Unit IDs

12DP|1|1B|C|30
12DP|1|1B|C|31
*
12DP|1|1B|G|51
12DP|1|1B|A|52
12DP|1|1B|A|53
12DP|1|1B|G|54

Current chains

Chain 1B

5S Ribosomal RNA

Nearby chains

Chain 1G

50S ribosomal protein L5

Chain 1S

50S ribosomal protein L18