IL_12DP_127
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 12DP|1|1a|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_127 not in the Motif Atlas
- Geometric match to IL_4LFB_017
- Geometric discrepancy: 0.1087
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
12DP|1|1a|G|409
12DP|1|1a|G|410
12DP|1|1a|A|411
12DP|1|1a|A|412
12DP|1|1a|G|413
12DP|1|1a|A|414
12DP|1|1a|A|415
12DP|1|1a|G|416
*
12DP|1|1a|U|427
12DP|1|1a|G|428
12DP|1|1a|U|429
12DP|1|1a|A|430
12DP|1|1a|A|431
12DP|1|1a|A|432
12DP|1|1a|C|433
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
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