IL_12DP_144
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_144 not in the Motif Atlas
- Homologous match to IL_8B0X_037
- Geometric discrepancy: 0.0826
- The information below is about IL_8B0X_037
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
12DP|1|1a|G|887
12DP|1|1a|G|888
12DP|1|1a|A|889
12DP|1|1a|G|890
12DP|1|1a|U|891
12DP|1|1a|A|892
12DP|1|1a|C|893
12DP|1|1a|G|894
*
12DP|1|1a|U|905
12DP|1|1a|G|906
12DP|1|1a|A|907
12DP|1|1a|A|908
12DP|1|1a|A|909
12DP|1|1a|C|910
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1q
- 30S ribosomal protein S17
Coloring options: