IL_12DP_168

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_168 not in the Motif Atlas

Homologous match to IL_8B0X_061

Geometric discrepancy: 0.1112

The information below is about IL_8B0X_061

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.5

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

50

Unit IDs

12DP|1|1a|G|1416
12DP|1|1a|G|1417
12DP|1|1a|A|1418
12DP|1|1a|G|1419
*
12DP|1|1a|U|1481
12DP|1|1a|G|1482
12DP|1|1a|A|1483
12DP|1|1a|C|1484

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA