IL_12DP_182

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

12DP|1|2A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_182 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1187

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.5

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

12DP|1|2A|C|288
12DP|1|2A|A|289
12DP|1|2A|G|290
*
12DP|1|2A|U|350
12DP|1|2A|G|351
12DP|1|2A|G|352
12DP|1|2A|G|353

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains