IL_12DP_200

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_200 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.141

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.4

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

11

Unit IDs

12DP|1|2A|G|864
12DP|1|2A|C|865
12DP|1|2A|A|866
12DP|1|2A|C|867
12DP|1|2A|U|868
*
12DP|1|2A|A|909
12DP|1|2A|A|910
12DP|1|2A|A|911
12DP|1|2A|C|912

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25