IL_12DP_230

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

12DP|1|2A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_230 not in the Motif Atlas

Geometric match to IL_9DFE_062

Geometric discrepancy: 0.1057

The information below is about IL_9DFE_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.3

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

12DP|1|2A|G|1526
12DP|1|2A|G|1527
12DP|1|2A|A|1528
12DP|1|2A|A|1528|||A
12DP|1|2A|G|1529
*
12DP|1|2A|U|1540
12DP|1|2A|G|1541
12DP|1|2A|A|1542
12DP|1|2A|C|1543
12DP|1|2A|A|1544
12DP|1|2A|A|1545
12DP|1|2A|C|1546

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains