IL_12DP_231

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_231 not in the Motif Atlas

Homologous match to IL_8B0X_123

Geometric discrepancy: 0.0777

The information below is about IL_8B0X_123

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.7

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

12DP|1|2A|G|1651
12DP|1|2A|A|1652
12DP|1|2A|G|1653
12DP|1|2A|A|1654
12DP|1|2A|A|1655
12DP|1|2A|C|1656
*
12DP|1|2A|G|2004
12DP|1|2A|A|2005
12DP|1|2A|C|2006

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17