IL_12DP_240

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

12DP|1|2A|G|1899, 12DP|1|2A|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_240 not in the Motif Atlas

Homologous match to IL_8B0X_134

Geometric discrepancy: 0.2726

The information below is about IL_8B0X_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

12DP|1|2A|U|1841
12DP|1|2A|G|1842
*
12DP|1|2A|U|1898
12DP|1|2A|G|1899
12DP|1|2A|A|1900
12DP|1|2A|A|1901

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA