IL_12DP_254

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

12DP|1|2A|G|2125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

12DP|1|2A|G|2124
12DP|1|2A|G|2125
12DP|1|2A|A|2126
12DP|1|2A|G|2127
12DP|1|2A|C|2128
*
12DP|1|2A|G|2160
12DP|1|2A|C|2161
12DP|1|2A|G|2162
12DP|1|2A|C|2163
12DP|1|2A|C|2164
12DP|1|2A|G|2165
12DP|1|2A|G|2166
12DP|1|2A|U|2167
12DP|1|2A|G|2168
12DP|1|2A|A|2169
12DP|1|2A|A|2170
12DP|1|2A|A|2171
12DP|1|2A|U|2172
12DP|1|2A|A|2173
12DP|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains