IL_12DP_266

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

12DP|1|2A|A|2572, 12DP|1|2A|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_266 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.1592

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.5

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

12DP|1|2A|C|2512
12DP|1|2A|G|2513
*
12DP|1|2A|C|2571
12DP|1|2A|A|2572
12DP|1|2A|C|2573
12DP|1|2A|G|2574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13