IL_12DP_271

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

12DP|1|2A|U|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_12DP_271 not in the Motif Atlas

Homologous match to IL_8B0X_162

Geometric discrepancy: 0.1178

The information below is about IL_8B0X_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.15

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

24

Unit IDs

12DP|1|2A|C|2680
12DP|1|2A|C|2681
12DP|1|2A|U|2682
12DP|1|2A|C|2683
12DP|1|2A|U|2684
*
12DP|1|2A|A|2725
12DP|1|2A|U|2726
12DP|1|2A|G|2727

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19