IL_12DP_281
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUCCC*GAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_12DP_281 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.1247
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.15
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 14
Unit IDs
12DP|1|2B|U|34
12DP|1|2B|U|35
12DP|1|2B|C|36
12DP|1|2B|C|37
12DP|1|2B|C|38
*
12DP|1|2B|G|44
12DP|1|2B|A|45
12DP|1|2B|A|46
12DP|1|2B|C|47
12DP|1|2B|A|48
Current chains
- Chain 2B
- 5S Ribosomal RNA
Nearby chains
- Chain 24
- 50S ribosomal protein L31
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S ribosomal protein L5
- Chain 2S
- 50S ribosomal protein L18
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